Peptide binding to HLA-DP proteins at pH 5.0 and pH 7.0: a quantitative molecular docking study

Keyphrases

• Acidic Environment 33%
• Acidic pH 33%
• Association Rate Constant 33%
• AutoDock 33%
• Binder 66%
• Binding Core 33%
• Binding Prediction 33%
• Binding Site 33%
• Carbonyl 33%
• Charged Peptides 33%
• Combinatorial Peptide Library 66%
• Dissociation Rate 33%
• Docking Protocol 33%
• Docking Score 66%
• Endosome 33%
• Histidine 100%
• HLA-DPB1 100%
• Hydrogen Bonds (H-bonds) 33%
• Imidazole 66%
• Imidazole Ring 33%
• Immune Response 33%
• Improved Prediction 33%
• MHC Class II 66%
• MHC Protein 66%
• Molecular Docking 33%
• Molecular Docking Studies 100%
• Negatively Charged 33%
• Peptide Binding 100%
• Peptide Binding Site 33%
• Peptide-HLA 33%
• PH Range 33%
• PH-driven Method 33%
• Positively Charged 33%
• Predictive Ability 66%
• Protein Complex 33%
• Protonation-deprotonation 33%
• Quantitative Matrix 66%
• Score-based 66%
• Single Amino Acid Substitution 33%
• Substitution Principle 33%
• X-ray Structure 33%

Biochemistry, Genetics and Molecular Biology

• Amino Acid Substitution 33%
• Association Rate Constant 33%
• AutoDock 33%
• Binding Site 66%
• Deprotonation 33%
• DNA Template 33%
• Docking (Molecular) 100%
• Histidine 100%
• HLA-DP 100%
• Hydrogen Bond 33%
• Immune Response 33%
• MHC Class II 66%
• Peptide Library 66%
• Protein Complexes 33%
• Protonation 33%
• X Ray 33%

Food Science

• Amino Acid 33%
• Histidine 100%
• Protein Complex 33%