Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit

Janarthanan Rasakanthan, Kate Sugden, Peter H. Tomlins

Research output: Contribution to journalArticle

Abstract

In Fourier domain optical coherence tomography (FD-OCT), a large amount of interference data needs to be resampled from the wavelength domain to the wavenumber domain prior to Fourier transformation. We present an approach to optimize this data processing, using a graphics processing unit (GPU) and parallel processing algorithms. We demonstrate an increased processing and rendering rate over that previously reported by using GPU paged memory to render data in the GPU rather than copying back to the CPU. This avoids unnecessary and slow data transfer, enabling a processing and display rate of well over 524,000 A-scan/s for a single frame. To the best of our knowledge this is the fastest processing demonstrated to date and the first time that FD-OCT processing and rendering has been demonstrated entirely on a GPU.
Original languageEnglish
Article number020505
Number of pages3
JournalJournal of Biomedical Optics
Volume16
Issue number2
DOIs
Publication statusPublished - 22 Feb 2011

Fingerprint

Optical tomography
tomography
Processing
Copying
Data transfer
Program processors
Display devices
Graphics processing unit
Fourier transformation
Data storage equipment
Wavelength
interference
wavelengths
Rendering (computer graphics)

Bibliographical note

Janarthanan Rasakanthan, Kate Sugden and Peter H. Tomlins, "Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit", J. Biomed. Opt. 16, 020505 (Feb 22, 2011); doi:10.1117/1.3548153 Copyright 2011 Society of Photo-Optical Instrumentation Engineers. One print or electronic copy may be made for personal use only. Systematic reproduction and distribution, duplication of any material in this paper for a fee or for commercial purposes, or modification of the content of the paper are prohibited.

Keywords

  • medical image processing
  • optical tomography

Cite this

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Processing and rendering of Fourier domain optical coherence tomography images at a line rate over 524 kHz using a graphics processing unit. / Rasakanthan, Janarthanan; Sugden, Kate; Tomlins, Peter H.

In: Journal of Biomedical Optics, Vol. 16, No. 2, 020505, 22.02.2011.

Research output: Contribution to journalArticle

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