Classification of normal and leukemic blast cells in B-ALL cancer using a combination of convolutional and recurrent neural networks

Salman Shah*, Wajahat Nawaz, Bushra Jalil, Hassan Aqeel Khan

*Corresponding author for this work

    Research output: Chapter in Book/Published conference outputConference publication

    Abstract

    Acute Lymphocytic or Lymphoblastic Leukemia (ALL) is a virulent form of blood cancer that affects white blood cells and the bone-marrow–spongy tissue. At the start of ALL, immature white blood cells proliferate and replace healthy cells in the bone marrow. ALL progresses quickly and can be fatal within a few months if not treated. Computer assisted diagnosis and prognosis of ALL, therefore, has the potential to save many lives but requires high accuracy classification of malignant cells which is challenging due to the visual similarity between normal and malignant cells. In this work, we employ a custom-built deep learning model for the classification of immature lymphoblasts and normal cells. Our model is an ensemble of convolutional and recurrent neural networks. It also exploits the spectral features of the cells by using discrete cosine transform in conjunction with an RNN. The proposed classifier has been validated using multiple experiments. Our approach is able to achieve substantial performance gains when compared to, conventional, stand-alone CNN- and RNN-based methods. The highest accuracy achieved by our model is 86.6%.

    Original languageEnglish
    Title of host publicationISBI 2019 C-NMC Challenge: Classification in Cancer Cell Imaging
    Subtitle of host publicationSelect Proceedings
    Pages23-31
    Number of pages9
    DOIs
    Publication statusPublished - 4 Feb 2020
    Event16th IEEE International Symposium on Biomedical Imaging, ISBI 2019 - Venice, Italy
    Duration: 8 Apr 201911 Apr 2019

    Publication series

    NameLecture Notes in Bioengineering
    ISSN (Print)2195-271X
    ISSN (Electronic)2195-2728

    Conference

    Conference16th IEEE International Symposium on Biomedical Imaging, ISBI 2019
    Country/TerritoryItaly
    CityVenice
    Period8/04/1911/04/19

    Keywords

    • Acute Lymphocytic or Lymphoblastic Leukemia
    • Convolutional neural networks
    • DCT
    • Ensemble models
    • Fine-tuning
    • LSTM
    • Recurrent neural networks

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