In silico prediction of peptide-MHC binding affinity using SVRMHC

Research output

Research output per year 2007 2007 2007

• 17 Citations
• 5 Chapter (peer-reviewed)
• 1 Edited Book
• 1 Foreword/postscript

Research output per year

Research output per year

Search results

• 2007

  Immunoinformatics and the in silico prediction of immunogenicity: an introduction

  Flower, D. R., 16 Jul 2007, Immunoinformatics: predicting immunogenicity in silico. Flower, D. R. (ed.). Totowa, NJ (US): Humana Press, p. 1-15 15 p. (Methods in molecular biology™; vol. 409).

  Research output: Chapter in Book/Published conference output › Chapter (peer-reviewed) › peer-review

  • Immunogenicity 100%
  • In Silico Prediction 100%
  • Immunoinformatics 100%
  • Immune System 50%
  • Infectious Agent 50%

  26   Link opens in a new tab Citations (Scopus)

• Molecular dynamics simulations: bring biomolecular structures alive on a computer

  Wan, S., Coveney, P. V. & Flower, D. R., 16 Jul 2007, Immunoinformatics: predicting immunogenicity in silico. Flowers, D. R. (ed.). Totowa, NJ (US): Humana Press, p. 321-339 19 p. (Methods in molecular biology™; vol. 409).

  Research output: Chapter in Book/Published conference output › Chapter (peer-reviewed) › peer-review

  • Molecular Dynamics Simulation 100%
  • Biomolecular Structure 100%
  • Dynamics 100%
  • Molecular Graphics 33%
  • Molecular Dynamics 25%

  2   Link opens in a new tab Citations (Scopus)

• Static energy analysis of MHC class I and class II peptide-binding affinity

  Davies, M. N. & Flower, D. R., 16 Jul 2007, Immunoinformatics: predicting immunogenicity in silico. Flowers, D. R. (ed.). Totowa, NJ (US): Humana Press, p. 309-320 12 p. (Methods in molecular biology™; vol. 409).

  Research output: Chapter in Book/Published conference output › Chapter (peer-reviewed)

  • MHC Class II 100%
  • Peptide Binding Affinity 100%
  • Energy Analysis 100%
  • Static Power 100%
  • Binding Affinity 100%

  6   Link opens in a new tab Citations (Scopus)

• The classification of HLA supertypes by GRID/CPCA and hierarchical clustering methods

  Guan, P., Doytchinova, I. A. & Flower, D. R., 16 Jul 2007, Immunoioformatics: prediciting immunogenicity in silco. Flower, D. R. (ed.). Totowa, NJ (US): Humana Press, p. 143-154 12 p. (Methods in molecular biology™; vol. 409).

  Research output: Chapter in Book/Published conference output › Chapter (peer-reviewed) › peer-review

  • Principal Coordinate Analysis (PCoA) 100%
  • Supertype 100%
  • Hierarchical Clustering 100%
  • Human Leukocyte Antigen 100%
  • Hierarchical Clustering Algorithm 100%

  2   Link opens in a new tab Citations (Scopus)

• Toward the prediction of class I and II mouse major histocompatibility complex-peptide-binding affinity: in silico bioinformatic step-by-step guide using quantitative structure-activity relationships

  Hattotuwagama, C. K., Doytchinova, I. A. & Flower, D. R., 16 Jul 2007, Immunoinformatics: predicting Immunogenicity in silico. Flowers, D. R. (ed.). Totowa, NJ (US): Humana Press, p. 227-245 19 p. (Methods in molecular biology™; vol. 409).

  Research output: Chapter in Book/Published conference output › Chapter (peer-reviewed) › peer-review

  • Bioinformatics 100%
  • Major Histocompatibility Complex 100%
  • Peptide Binding Affinity 100%
  • HLA-A 100%
  • Quantitative Structure-activity Relationship 100%

  13   Link opens in a new tab Citations (Scopus)